PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AT2G25820.1
Common NameERF042, ESE2, F17H15.15
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family ERF
Protein Properties Length: 225aa    MW: 24864.8 Da    PI: 4.7722
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AT2G25820.1genomeTAIRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP251.23.1e-162674355
          AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                 y+G r ++ +g+Wv+eIr+p++   + r++lg+f tae+Aa+a++ a+++++g
  AT2G25820.1 26 YRGARMRS-WGKWVSEIREPRK---KSRIWLGTFPTAEMAARAHDVAALSIKG 74
                 88889888.**********843...6***********************9987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.5E-102574IPR001471AP2/ERF domain
SMARTSM003801.4E-342588IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.3E-312583IPR001471AP2/ERF domain
PROSITE profilePS5103223.0372582IPR001471AP2/ERF domain
SuperFamilySSF541711.57E-202583IPR016177DNA-binding domain
PRINTSPR003673.4E-102637IPR001471AP2/ERF domain
CDDcd000181.19E-322684No hitNo description
PRINTSPR003673.4E-104864IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009873Biological Processethylene-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000293anatomyguard cell
PO:0009005anatomyroot
PO:0009010anatomyseed
PO:0009029anatomystamen
PO:0009031anatomysepal
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
MVDSHGSDTE CSSKKKKEKT KEKGVYRGAR MRSWGKWVSE IREPRKKSRI WLGTFPTAEM  60
AARAHDVAAL SIKGSSAILN FPELADFLPR PVSLSQQDIQ AAAAEAALMD FKTVPFHLQD  120
DSTPLQTRCD TEKIEKWSSS SSSASSSSSS SSSSSSSMLS GELGDIVELP SLENNVKYDC  180
ALYDSLEGLV SMPPWLDATE NDFRYGDDSV LLDPCLKESF LWNYE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-172682360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID E-value
Genevisible266661_at0.0
Expression AtlasAT2G25820-
AtGenExpressAT2G25820-
ATTED-IIAT2G25820-
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, stems, seeds and stamen. {ECO:0000269|PubMed:16307362}.
Functional Description ? help Back to Top
Source Description
TAIRencodes a member of the DREB subfamily A-4 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 17 members in this subfamily including TINY.
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAT2G25820.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By drought. {ECO:0000269|PubMed:16307362}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
T-DNA ExpressAT2G25820
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0053950.0AC005395.3 Arabidopsis thaliana chromosome 2 clone F17H15 map B68, complete sequence.
GenBankAY9741980.0AY974198.1 Arabidopsis thaliana clone At2g25820 AP2/EREBP transcription factor mRNA, complete cds.
GenBankCP0026850.0CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_565609.31e-165ethylene-responsive transcription factor ERF042
SwissprotQ52QU11e-167ERF42_ARATH; Ethylene-responsive transcription factor ERF042
TrEMBLD7LBI31e-122D7LBI3_ARALL; Transcription factor
STRINGAT2G25820.11e-164(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM18528283
Representative plantOGRP6161718
Publications ? help Back to Top
  1. Riechmann JL, et al.
    Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes.
    Science, 2000. 290(5499): p. 2105-10
    [PMID:11118137]
  2. Yamada K, et al.
    Empirical analysis of transcriptional activity in the Arabidopsis genome.
    Science, 2003. 302(5646): p. 842-6
    [PMID:14593172]
  3. Feng JX, et al.
    An annotation update via cDNA sequence analysis and comprehensive profiling of developmental, hormonal or environmental responsiveness of the Arabidopsis AP2/EREBP transcription factor gene family.
    Plant Mol. Biol., 2005. 59(6): p. 853-68
    [PMID:16307362]
  4. Nakano T,Suzuki K,Fujimura T,Shinshi H
    Genome-wide analysis of the ERF gene family in Arabidopsis and rice.
    Plant Physiol., 2006. 140(2): p. 411-32
    [PMID:16407444]
  5. Zhang L, et al.
    An AP2 domain-containing gene, ESE1, targeted by the ethylene signaling component EIN3 is important for the salt response in Arabidopsis.
    Plant Physiol., 2011. 157(2): p. 854-65
    [PMID:21832142]